the shop we do the liners for regularly is a performance shop not a dealership, a lot of the cars are track only cars, and we charge them for liners not guides. granted i haven't done thousands of liner myself but i know my boss in his 40+ years owning the shop has, and to the best of my knowledge there has been no issue running liners in heads with removable guides.
i cant argue that replacing the guide inst a better repair, but like wise forged pistons are much stronger pistons than hyperutectic but not every engine needs it, so if a cheaper alternative will do the job for that specific application then i think it is defiantly worth consideration, and are replacement guides available for the SVT head?
the thermal property between the head, guide and valve are indeed critical, but given that the SVT uses ferrous guides to begin with i doubt that the liners would reduce the ability of the valve to transfer heat.
what problems have you seen when using liners in heads like the SVT, stuck valves? premature wear of valve? dropped liners?
if the shop is using sub par parts then it sounds like that's the shops fault not the repair itself, and sounds like the same shop would likely do a sub par job replacing the guides as well, either way sounds like finding a new machine shop is in order