Once rebuilt, the valve seat should be ok depending on how they did the repair. 05's are very reliable. As far as the tumble flap problem that causes what sounds like valve ticking, I've been driving mine for about 80k miles with a tumble flap tapping away. Another FF had his tumble flap problem cause a vacuum leak that required replacing the intake manifold. For someone who doesn't work on their own vehicle, this could cost you close to $1k. That problem exists on all Focis with the Duratec engine, but I've seen very few on this board where it failed to the point that the intake manifold was damaged.
Shaky engine = yes, needs new motor mounts. I would replace all 3, typically those all need to be replaced. Other than that, you should notice MUCH better braking, MUCH better acceleration, and probably slightly less fuel economy depending on driving habits. Most other problems with that vehicle are not a big deal. Believe me, I abuse and neglect my poor little wagon, and it still gets me to work. You should look at everything very carefully though. I am highly suspect of ANY small 4 cyl vehicle for sale used right now because I don't think anyone is going to get rid of a good fuel efficient car, and take up a note. Most Americans have learned not to overstep their finances, and if it runs- keep it.
Even if all the rest of the 05's in the world are great cars- that doesn't mean that this one is- or isn't. Just be careful, and wary. My advice: if you like the 01, keep it, put back as much extra money as you can per month in a car fund. Pretend you have a note to pay. Do that for a year, do plenty of research and window shopping, then go get a new one while the interest rates are low. Sell your car in the local paper. Never trade at the dealer, they won't give you crap for it. It is always better to buy a car while you still have a car to drive that way you won't be swayed by dealer sales tricks. I always get ripped off when I "need" a car instead of when I'm just looking and can walk away.