nah the MAF is in fine. i promise.
I'd still be willing to put my money on the Mass Air Flow Sensor! It's either facing the wrong direction, dirty or not connected properly. Every time I've seen a thread like this "Help, I Just Installed a CAI and....", it has been the MAF 99.9% of the time. I forgot to connect mine once after doing some work and, though I knew what I did as soon as I stepped on the gas, the symptoms sound identical to yours.
But if you are positive the MAF is facing the incoming air exactly the same way it was in the stock setup, I'd double check the connection (any pins get bent or broken, any wires get pulled loose) and make sure the MAF didn't get dirty or wet during the install. Pep Boys should sell a MAF cleaner you just spray on.
Just my two cents worth - what ever it is, I hope you find it soon.