So I now have Performance Blue Focus with no NAV. I tried to have the dealer look for a blue one with NAV, no luck, they had the biggest inventory of Focuses in the area. I am happy with the car. I was only looking forward to the NAV for re-sale value.
I am happy with my decision and maybe Ford will come out with a VIN based hack to add NAV if people want to upgrade. All it will take is a flash of the system to add the firmware so that NAV can be activated.